91����

Rahmati Ishka M, Brown E, Weigand C, Tillett RL, Schlauch KA, Miller G, Harper JF. A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 (cngc16). BMC genomics. 2018; 19(1):549. PMID: 30041596, PMCID: PMC6057101

Alvarez-Ponce D, Weitzman CL, Tillett RL, Sandmeier FC, Tracy CR. High quality draft genome sequences of Mycoplasma agassizii strains PS6T and723 isolated from Gopherus tortoises with upper respiratory tract disease. Standards in genomic sciences. 2018; 13:12. PMID: 29725499, PMCID: PMC5921776

Weitzman CL, Tillett RL, Sandmeier FC, Tracy CR, Alvarez-Ponce D. High quality draft genome sequence of Mycoplasma testudineum strain BH29T, isolated from the respiratory tract of a desert tortoise. Standards in genomic sciences. 2018; 13:9. PMID: 29682170, PMCID: PMC5896096

Singh S, Stafford P, Schlauch KA, Tillett RL, Gollery M, Johnston SA, Khaiboullina SF, De Meirleir KL, Rawat S, Mijatovic T, Subramanian K, Palotás A, Lombardi VC. Humoral Immunity Profiling of Subjects with Myalgic Encephalomyelitis Using a Random Peptide Microarray Differentiates Cases from Controls with High Specificity and Sensitivity. Mol Neurobiol. 2018 Jan;55(1):633-641. PubMed PMID: 27981498; PubMed Central PMCID: PMC5472503.

Romanick SS, Ulrich C, Schlauch K, Hostler A, Payne J, Woolsey R, Quilici D, Feng Y, Ferguson BS. Obesity-mediated regulation of cardiac protein acetylation: parallel analysis of total and acetylated proteins via TMT-tagged mass spectrometry. Biosci Rep. 2018 Sep 7;38(5). PubMed PMID: 30061171; PubMed Central PMCID: PMC6127670.

Copley Salem C, Ulrich C, Quilici D, Schlauch K, Buxton ILO, Burkin H. Mechanical strain induced phospho-proteomic signaling in uterine smooth muscle cells. J Biomech. 2018 May 17;73:99-107. PubMed PMID: 29661501; PubMed Central PMCID: PMC5932261.

Ghan R, Petereit J, Tillett RL, Schlauch KA, Toubiana D, Fait A, Cramer GR. The common transcriptional subnetworks of the grape berry skin in the late stages of ripening. BMC plant biology. 2017; 17(1):94. PMID: 28558655, PMCID: PMC5450095

Nadeau JA, Petereit J, Tillett RL, Jung K, Fotoohi M, MacLean M, Young S, Schlauch K, Blomquist GJ, Tittiger C. Comparative transcriptomics of mountain pine beetle pheromone-biosynthetic tissues and functional analysis of CYP6DE3. BMC genomics. 2017; 18(1):311. PMID: 28427347, PMCID: PMC5397757

Yobi A, Schlauch KA, Tillett RL, Yim WC, Espinoza C, Wone BW, Cushman JC, Oliver MJ. Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics. BMC plant biology. 2017; 17(1):67. PMID: 28351347, PMCID: PMC5371216

Mukhamedyarov MA, Rizvanov AA, Yakupov EZ, Zefirov AL, Kiyasov AP, Reis HJ, Teixeira AL, Vieira LB, Lima LM, Salafutdinov II, Putekhova EO, Khaiboullina SF, Schlauch KA, Lombardi VC, Palotas A. Transcriptional Analysis of Blood Lymphocytes and Skin Fibroblasts, Keratinocytes, and Endothelial Cells as a Potential Biomarker for Alzheimer's Disease. Journal of Alzheimer's Disease. 2016 Feb 2. PMID: 27589530.

Petereit J, Smith S, Harris FC Jr, Schlauch KA. petal: Co-expression network modelling in R. BMC Systems Biology. 2016 Aug 1;10 Suppl 2:51. PMID: 27490697. PMCID: PMC4977474.

Schlauch KA, Khaiboullina SF, De Meirleir KL, Rawat S, Petereit J, Rizvanov AA, Blatt N, Mijatovic T, Kulick D, Palotás A, Lombardi VC. Genome-wide association analysis identifies genetic variations in subjects with myalgic encephalomyelitis/chronic fatigue syndrome. Translational psychiatry. 2016 Feb 1;6(2):e730. PMID: 26859813.

Rattanakon S, Ghan R, Gambetta GA, Deluc LG, Schlauch KA, Cramer GR. (2016) Abscisic acid transcriptomic signaling varies with grapevine organ. BMC plant biology. 16(1):1. PMCID: PMC4802729.

Hopper DW, Ghan R, Schlauch KA, Cramer GR. Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance. BMC plant biology. 16:118. PMCID:PMC4877820

Kaur G, Markley B, Schlauch K, Izuora KE. Outcomes of Less Intensive Glycemic Target for a Subcutaneous Insulin Protocol in Hospitalized Patients. The American journal of the medical sciences. 2015 Dec 1;350(6):442-6. PMID: 26445303.

Ulrich C, Quilici DR, Schlauch KA, Buxton IL. Proteomic network analysis of human uterine smooth muscle in pregnancy, labor, and preterm labor. Integrative molecular medicine. 2015 Aug;2(4):261. PMCID: PMC4582795, PMID: 26413312.

Yang X, Cushman JC, Borland AM, Edwards EJ, Wullschleger SD, Tuskan GA, Owen NA, Griffiths H, Smith JA, De Paoli HC, Weston DJ. A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world. New Phytologist. 2015 Aug 1;207(3):491-504. PMID: 26153373.

Izuora K, Ezeanolue E, Schlauch K, Neubauer M, Gewelber C, Umpierrez G. Impact of periodontal disease on outcomes in diabetes. Contemporary clinical trials. 2015 Mar 31;41:93-9. PMCID: PMC4380752, PMID: 25623292.

Ghan R, Van Sluyter SC, Hochberg U, Degu A, Hopper DW, Tillet RL, Schlauch KA, Haynes PA, Fait A, Cramer GR. Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars. BMC genomics. 2015 Nov 16;16(1):1. PMCID: PMC4647476, PMID: 26573226.

Ulrich CC, Quilici DR, Schlauch KA, Burkin HR, Buxton IL. LC/MS/MS data analysis of the human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor. Data in brief. 2015 Sep 30;4:591-4. PMCID: PMC4543089, PMID: 26322325.

Fennell AY, Schlauch KA, Gouthu S, Deluc LG, Khadka V, Sreekantan L, Grimplet J, Cramer GR, Mathiason KL. Short day transcriptomic programming during induction of dormancy in grapevine. Frontiers in plant science. 2015;6. PMCID: PMC463227, PMID: 26582400.

Petereit J, Harris FC, Schlauch K. petal: A novel co-expression network modeling system. Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on 2015 Nov 9 (pp. 234-241). IEEE.

Borland AM, Hartwell J, Weston DJ, Schlauch KA, Tschaplinski TJ, Tuskan GA, Yang X, Cushman JC. Engineering crassulacean acid metabolism to improve water-use efficiency. Trends in Plant Science. 2014 May 31;19(5):327-38. PMCID: PMC406585, PMID: 24559590.

Cramer GR, Ghan R, Schlauch KA, Tillett RL, Heymann H, Ferrarini A, Delledonne M, Zenoni S, Fasoli M, Pezzotti M. Transcriptomic analysis of the late stages of grapevine (Vitis vinifera cv. Cabernet Sauvignon) berry ripening reveals significant induction of ethylene signaling and flavor pathways in the skin. BMC plant biology. 2014 Dec 19;14(1):1. PMCID: PMC4312598, PMID: 25524329.

Silvera K, Winter K, Rodriguez BL, Albion RL, Cushman JC. Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism. Journal of Experimental Botany. 2014;65(13):3623-3636. doi:10.1093/jxb/eru234. PMCID: PMC4085970.

Braga MV, Pinto ZT, de Carvalho Queiroz MM, Matsumoto N, Blomquist GJ. Cuticular hydrocarbons as a tool for the identification of insect species: Puparial cases from Sarcophagidae. Acta tropica. 2013 Dec 31;128(3):479-85. PMCID: PMC3839396, PMID: 23932943.

Ulrich C, Quilici DR, Schlauch K, Buxton IL. The Human Uterine Smooth Muscle S-nitrosoproteome Fingerprint in Pregnancy, Labor and Preterm Labor. American Journal of Physiology-Cell Physiology. 2013 Aug 15:ajpcell-00198. PMCID: PMC3798678, PMID: 23948706.

McDowell SC, Lopez-Marques RL, Poulsen LR, Palmgren MG, Harper JF. Loss of the Arabidopsis thaliana P 4-ATPase ALA3 Reduces Adaptability to Temperature Stresses and Impairs Vegetative, Pollen, and Ovule Development. PloS one. 2013 May 7;8(5):e62577. PMCID: PMC3646830, PMID: 23667493.

Colletti E, El Shabrawy D, Soland M, Yamagami T, Mokhtari S, Osborne C, Schlauch K, Zanjani ED, Porada CD, Almeida-Porada G. EphB2 isolates a human marrow stromal cell subpopulation with enhanced ability to contribute to the resident intestinal cellular pool. The FASEB Journal. 2013 Jun 1;27(6):2111-21. PMCID: PMC3659358, PMID: 23413357.

Gadam R, Schlauch K, Izuora K. Frax prediction without BMD for assessment of osteoporotic fracture risk. Endocrine Practice. 2013 Sep 1;19(5):780-4. PMCID: PMC4016963, PMID: 24121261.

Kulick D, Langer RD, Ashley JM, Gans KM, Schlauch K, Feller C. Live well: a practical and effective low-intensity dietary counseling intervention for use in primary care patients with dyslipidemia-a randomized controlled pilot trial. BMC family practice. 2013 May 12;14(1):1. PMCID: PMC3662581, PMID: 23663789.

Suzuki N, Miller G, Salazar C, Mondal HA, Shulaev E, Cortes DF, Shuman JL, Luo X, Shah J, Schlauch K, Shulaev V. Temporal-spatial interaction between reactive oxygen species and abscisic acid regulates rapid systemic acclimation in plants. The Plant Cell. 2013 Sep 1;25(9):3553-69. PMCID: PMC3809549, PMID: 24038652.

Samburova V, Lemos MS, Hiibel S, Hoekman SK, Cushman JC, Zielinska B. Analysis of triacylglycerols and free fatty acids in algae using ultra-performance liquid chromatography mass spectrometry. Journal of the American Oil Chemists' Society. 2013 Jan 1;90(1):53-64.

Tunc-Ozdemir M, Tang C, Ishka MR, Brown E, Groves NR, Myers CT, Rato C, Poulsen LR, McDowell S, Miller G, Mittler R. A cyclic nucleotide-gated channel (CNGC16) in pollen is critical for stress tolerance in pollen reproductive development. Plant physiology. 2013 Feb 1;161(2):1010-20. PMCID: PMC3560999, PMID: 23370720.

Yobi A, Schlauch KA, Perryman B, Oliver MJ, Cushman JC. Biomass Production, Nutritional and Mineral Content of Desiccation‐Sensitive and Desiccation‐Tolerant Species of Sporobolus under Multiple Irrigation Regimes. Journal of Agronomy and Crop Science. 2013 Oct 1;199(5):309-20.

Burnham-Marusich AR, Snodgrass CJ, Johnson AM, Kiyoshi CM, Buzby SE, Gruner MR, Berninsone PM. Metabolic labeling of Caenorhabditis elegans primary embryonic cells with azido-sugars as a tool for glycoprotein discovery. PloS one. 2012 Nov 12;7(11):e49020. PMCID: PMC3495777, PMID: 23152843.

Feller C., Schlauch K.A., Harris F.C., An Introduction to Proactive Server Preservation in an HPC Environment. Proceedings of the 2012 ISCA International Conference on Advanced Computing and Communication. Los Angeles; 2012 June;51-57.

Haider MS, Barnes JD, Cushman JC, Borland AM. A CAM-and starch-deficient mutant of the facultative CAM species Mesembryanthemum crystallinum reconciles sink demands by repartitioning carbon during acclimation to salinity. Journal of experimental botany. 2012 Jan 4:err412. PMCID: PMC3295396, PMID: 22219316.

Jones M, Johnson M, Samourjian E, Slauch K, Ozobia N. ERCP and laparoscopic cholecystectomy in a combined (one-step) procedure: a random comparison to the standard (two-step) procedure. Surgical endoscopy. 2013 Jun 1;27(6):1907-12. PMCID: PMC4050060, PMID: 23239300.

Martin LM, Holmes SD, Henry LL, Schlauch KA, Stone LE, Roots A, Hunt SL, Ad N. Health-related quality of life after coronary artery bypass grafting surgery and the role of gender. Cardiovascular Revascularization Medicine. 2012 Dec 31;13(6):321-7. PMID: 23084324.

Altick AL, Feng CY, Schlauch K, Johnson LA, von Bartheld CS. Differences in Gene Expression between Strabismic and Normal Human Extraocular MusclesGene Expression in Strabismic Extraocular Muscle. Investigative ophthalmology & visual science. 2012 Aug 1;53(9):5168-77. PMCID: PMC3416046, PMID: 22786898.

Tillett RL, Wheatley MD, Tattersall EA, Schlauch KA, Cramer GR, Cushman JC. The Vitis vinifera C‐repeat binding protein 4 (VvCBF4) transcriptional factor enhances freezing tolerance in wine grape. Plant biotechnology journal. 2012 Jan 1;10(1):105-24. PMCID: PMC4357522, PMID: 21914113.

Bego MG, Keyes LR, Maciejewski J, St Jeor SC. Human cytomegalovirus latency-associated protein LUNA is expressed during HCMV infections in vivo. Archives of virology. 2011 Oct 1;156(10):1847-51

Curran A, Chang IF, Chang CL, Garg S, Miguel RM, Barron YD, Li Y, Romanowsky S, Cushman JC, Gribskov M, Harmon AC. Calcium-dependent protein kinases from Arabidopsis show substrate specificity differences in an analysis of 103 substrates. Front Plant Sci. 2011 Aug 30;2:36. PMCID: PMC3355778, PMID: 22645532.

Deluc LG, Decendit A, Papastamoulis Y, Mérillon JM, Cushman JC, Cramer GR. Water deficit increases stilbene metabolism in Cabernet Sauvignon berries. Journal of agricultural and food chemistry. 2010 Dec 3;59(1):289-97. PMCID: PMC3015458, PMID: 21128664.

Ramos AA, Polle J, Tran D, Cushman JC, Jin E, Varela JC. The unicellular green alga Dunaliella salina Teod. as a model for abiotic stress tolerance: genetic advances and future perspectives. Algae. 2011 Mar 1;26(1):3.

Suzuki N, Sejima H, Tam R, Schlauch K, Mittler R. Identification of the MBF1 heat‐response regulon of Arabidopsis thaliana. The Plant Journal. 2011 Jun 1;66(5):844-51. PMCID: PMC4372994, PMID: 21457365.

Tillett RL, Ergül A, Albion RL, Schlauch KA, Cramer GR, Cushman JC. Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets. BMC plant biology. 2011 May 18;11(1):1. PMCID: PMC3224124, PMID: 21592389.

Alkayal F, Albion RL, Tillett RL, Hathwaik LT, Lemos MS, Cushman JC. Expressed sequence tag (EST) profiling in hyper saline shocked Dunaliella salina reveals high expression of protein synthetic apparatus components. Plant science. 2010 Nov 30;179(5):437-49. PMID: 21802602.

Aw T, Schlauch K, Keeling CI, Young S, Bearfield JC, Blomquist GJ, Tittiger C. Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fat bodies. BMC genomics. 2010 Mar 30;11(1):1. PMCID: PMC285875, PMID: 20353591.

Baze MM, Schlauch K, Hayes JP. Gene expression of the liver in response to chronic hypoxia. Physiological genomics. 2010 May 1;41(3):275-88. PMCID: PMC286910, PMID: 2010370.

Cartwright MJ, Schlauch K, Lenburg ME, Tchkonia T, Pirtskhalava T, Cartwright A, Thomou T, Kirkland JL. Aging, depot origin, and preadipocyte gene expression. The Journals of Gerontology Series A: Biological Sciences and Medical Sciences. 2010 Mar 1;65(3):242-51. PMCID: PMC2904595, PMID: 20106964.

Kuhn AR, Schlauch K, Lao R, Halayko AJ, Gerthoffer WT, Singer CA. MicroRNA expression in human airway smooth muscle cells: role of miR-25 in regulation of airway smooth muscle phenotype. American journal of respiratory cell and molecular biology. 2010 Apr;42(4):506-13. PMCID: PMC2848741, PMID: 19541842.

Mittler T, Levy M, Chad F, Karen S. MULTBLAST: A web application for multiple BLAST searches. Bioinformation. 2010 Nov 1;5(5):224-6. PMCID: PMC3040504, PMID: 21364803.

Oliver MJ, Cushman JC, Koster KL. Dehydration tolerance in plants. Methods Mol Biol. 2010 Mar 10;639:3-24. PMID: 20387037.

Silvera K, Santiago LS, Cushman JC, Winter K. The incidence of crassulacean acid metabolism in Orchidaceae derived from carbon isotope ratios: a checklist of the flora of Panama and Costa Rica. Botanical Journal of the Linnean Society. 2010 Jun 1;163(2):194-222.

Smith DR, Lee RW, Cushman JC, Magnuson JK, Tran D, Polle JE. The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA. BMC plant biology. 2010 May 7;10(1):83. PMCID: PMC3017802, PMID: 20459666.

Sreekantan L, Mathiason K, Grimplet J, Schlauch K, Dickerson JA, Fennell AY. Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning. Plant molecular biology. 2010 May 1;73(1-2):191-205. PMID: 20151315.

Sunagawa H, Cushman J, Agarie S. Crassulacean acid metabolism may alleviate production of reactive oxygen species in a facultative CAM plant, the common ice plant Mesembryanthemum crystallinum L. Plant production science. 2010 Jan 1;13(3):256-60.

Tran HA, Roy SK, Hebsur S, Barnett SD, Schlauch KA, Hunt SL, Holmes SD, Ad N. Performance of four risk algorithms in predicting intermediate survival in patients undergoing aortic valve replacement. Innovations: Technology and Techniques in Cardiothoracic and Vascular Surgery. 2010 Nov 1;5(6):407-12. PMID: 22437635.

Altick AL, Baryshnikova LM, Vu TQ, Von Bartheld CS. Quantitative analysis of multivesicular bodies (MVBs) in the hypoglossal nerve: evidence that neurotrophic factors do not use MVBs for retrograde axonal transport. Journal of Comparative Neurology. 2009 Jun 20;514(6):641-57. PMCID: PMC2861426, PMID: 19363811.

Baynosa J, Westphal LM, Madrigrano A, Wapnir I. Timing of breast cancer treatments with oocyte retrieval and embryo cryopreservation. Journal of the American College of Surgeons. 2009 Nov 30;209(5):603-7. PMID: 19854400.

Chang IF, Curran A, Woolsey R, Quilici D, Cushman JC, Mittler R, Harmon A, Harper JF. Proteomic profiling of tandem affinity purified 14‐3‐3 protein complexes in Arabidopsis thaliana. Proteomics. 2009 Jun 1;9(11):2967-85. PMCID: PMC4077669, PMID: 19452453.

Deluc LG, Quilici DR, Decendit A, Grimplet J, Wheatley MD, Schlauch KA, Mérillon JM, Cushman JC, Cramer GR. Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay. BMC genomics. 2009 May 8;10(1):212. PMCID: PMC270144, PMID: 19426499.

Grimplet J, Wheatley MD, Jouira HB, Deluc LG, Cramer GR, Cushman JC. Proteomic and selected metabolite analysis of grape berry tissues under well‐watered and water‐deficit stress conditions. Proteomics. 2009 May 1;9(9):2503-28. PMCID: PMC4090949, PMID: 19343710.

Miller G, Schlauch K, Tam R, Cortes D, Torres MA, Shulaev V, Dangl JL, Mittler R. The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli. Sci Signal. 2009 Aug 18;2(84):ra45. PMID: 19690331.

Silvera K, Santiago LS, Cushman JC, Winter K. Crassulacean acid metabolism and epiphytism linked to adaptive radiations in the Orchidaceae. Plant Physiology. 2009 Apr 1;149(4):1838-47. PMCID: PMC2663729, PMID: 19182098.

Uno Y, Milla MA, Maher E, Cushman JC. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Molecular Genetics and Genomics. 2009 Apr 1;281(4):375-90. PMID: 19130088.

Bradburne C, Chung MC, Zong Q, Schlauch K, Liu D, Popova T, Popova A, Bailey C, Soppet D, Popov S. Transcriptional and apoptotic responses of THP-1 cells to challenge with toxigenic, and non-toxigenic Bacillus anthracis. BMC immunology. 2008 Nov 13;9(1):1. PMCID: PMC2613145, PMID: 19014542.

Breland A, Nasser S, Schlauch K, Nicolescu M, Harris Jr FC. Efficient influenza a virus origin detection. Journal of Electronics and Computer Science. 2008 Dec;10:1-8.

Cushman JC, Tillett RL, Wood JA, Branco JM, Schlauch KA. Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM). Journal of Experimental Botany. 2008 May 1;59(7):1875-94. PMID: 18319238.

Cushman JC, Agarie S, Albion RL, Elliot SM, Taybi T, Borland AM. Isolation and characterization of mutants of common ice plant deficient in crassulacean acid metabolism. Plant physiology. 2008 May 1;147(1):228-38. PMCID: PMC2330286, PMID: 18326789.

Heyden M, Bründermann E, Heugen U, Niehues G, Leitner DM, Havenith M. Long-Range Influence of Carbohydrates on the Solvation Dynamics of Water -- Answers from Terahertz Absorption Measurements and Molecular Modeling Simulations. Journal of the American Chemical Society. 2008 Apr 5;130(17):5773-9. PMID: 18393415.

Horan K, Jang C, Bailey-Serres J, Mittler R, Shelton C, Harper JF, Zhu JK, Cushman JC, Gollery M, Girke T. Annotating genes of known and unknown function by large-scale coexpression analysis. Plant physiology. 2008 May 1;147(1):41-57. PMCID: PMC2330292, PMID: 18354039.

Morsy M, Gouthu S, Orchard S, Thorneycroft D, Harper JF, Mittler R, Cushman JC. Charting plant interactomes: possibilities and challenges. Trends in plant science. 2008 Apr 30;13(4):183-91.PMID: 18329319.

Luhua S, Ciftci-Yilmaz S, Harper J, Cushman J, Mittler R. Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function. Plant Physiology. 2008 Sep 1;148(1):280-92. PMCID: PMC2528079, PMID: 18614705.

Wu Y, Yoder A, Yu D, Wang W, Liu J, Barrett T, Wheeler D, Schlauch K. Cofilin activation in peripheral CD4 T cells of HIV-1 infected patients: a pilot study. Retrovirology. 2008 Oct 17;5(1):95. PMCID: PMC2576353,PMID: 18928553.

Chen C, Beck BW, Krause K, Weksberg TE, Pettitt BM. Effects of dimerization of Serratia marcescens endonuclease on water dynamics. Biopolymers. 2007 Feb 15;85(3):241-52. PMCID: PMC2583238, PMID: 17133507.

Cramer GR, Ergül A, Grimplet J, Tillett RL, Tattersall EA, Bohlman MC, Vincent D, Sonderegger J, Evans J, Osborne C, Quilici D. Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Functional & integrative genomics. 2007 Apr 1;7(2):111-34. PMID: 17136344.

Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR. Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development. BMC genomics. 2007 Nov 22;8(1):1. PMCID: PMC2220006, PMID: 18034876.

Gollery M. Your database is obsolete: The promise of contextual bioinformatics. Bioinformation. 2007 Feb 19;1(9):356. PMCID: PMC1891721, PMID: 17597919.

Gollery M, Harper J, Cushman J, Mittler T, Mittler R. POFs: what we don't know can hurt us. Trends in plant science. 2007 Nov 30;12(11):492-6. PMID: 17928258.

Grimplet J, Deluc LG, Tillett RL, Wheatley MD, Schlauch KA, Cramer GR, Cushman JC. Tissue-specific mRNA expression profiling in grape berry tissues. BMC genomics. 2007 Jun 21;8(1):1. PMCID: PMC1925093, PMID: 17584945.

Tattersall EA, Grimplet J, DeLuc L, Wheatley MD, Vincent D, Osborne C, Ergül A, Lomen E, Blank RR, Schlauch KA, Cushman JC. Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling compared to osmotic and salinity stress. Functional & integrative genomics. 2007 Oct 1;7(4):317-33. PMID: 17578611.

Vincent D, Ergül A, Bohlman MC, Tattersall EA, Tillett RL, Wheatley MD, Woolsey R, Quilici DR, Joets J, Schlauch K, Schooley DA. Proteomic analysis reveals differences between Vitis vinifera L. cv. Chardonnay and cv. Cabernet Sauvignon and their responses to water deficit and salinity. Journal of Experimental Botany. 2007 May 1;58(7):1873-92. PMID: 17443017.

Bearfield JC, Keeling CI, Young S, Blomquist GJ, Tittiger C. Isolation, endocrine regulation and mRNA distribution of the 3‐hydroxy‐3‐methylglutaryl coenzyme A synthase (HMG‐S) gene from the pine engraver, Ips pini (Coleoptera: Scolytidae). Insect molecular biology. 2006 Apr 1;15(2):187-95. PMID: 16640729.

Borland A, Elliott S, Patterson S, Taybi T, Cushman J, Pater B, Barnes J. Are the metabolic components of crassulacean acid metabolism up-regulated in response to an increase in oxidative burden?. Journal of experimental botany. 2006 Jan 1;57(2):319-28. PMID: 16356942.

Chen C, Beck BW, Krause K, Pettitt BM. Solvent participation in Serratia marcescens endonuclease complexes. Proteins: Structure, Function, and Bioinformatics. 2006 Mar 1;62(4):982-95. PMID: 16355414.

Gollery M, Harper J, Cushman J, Mittler T, Girke T, Zhu JK, Bailey-Serres J, Mittler R. What makes species unique? The contribution of proteins with obscure features. Genome biology. 2006 Jul 19;7(7):R57. PMCID: PMC1779552, PMID: 16859532.

Grzymski JJ, Carter BJ, DeLong EF, Feldman RA, Ghadiri A, Murray AE. Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria. Applied and Environmental Microbiology. 2006 Feb 1;72(2):1532-41. PMCID: PMC1392886, PMID: 16461708.

Honeybee Genome Sequencing Consortium. Insights into social insects from the genome of the honeybee Apis mellifera. Nature. 2006 Oct 26;443(7114):931. PMCID: PMC2048586, PMID: 17073008.

Iturriaga G, Cushman MA, Cushman JC. An EST catalogue from the resurrection plant Selaginella lepidophylla reveals abiotic stress-adaptive genes. Plant Science. 2006 Jun 30;170(6):1173-84.

Miller GA, Mittler RO. Could heat shock transcription factors function as hydrogen peroxide sensors in plants?. Annals of Botany. 2006 Aug 1;98(2):279-88. PMCID: PMC2803459, PMID: 16740587.

Mittler R. Abiotic stress, the field environment and stress combination. Trends in plant science. 2006 Jan 31;11(1):15-9. PMID: 16359910.

Milla MA, Uno Y, Chang F, Townsend J, Maher EA, Quilici D, Cushman JC. A novel yeast two-hybrid approach to identify CDPK substrates: Characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein 1. FEBS letters. 2006 Feb 6;580(3):904-11. PMID: 16438971.

Salzameda B, Facemyer KC, Beck BW, Cremo CR. The N-terminal lobes of both regulatory light chains interact with the tail domain in the 10 S-inhibited conformation of smooth muscle myosin. Journal of Biological Chemistry. 2006 Dec 15;281(50):38801-11. PMID: 17012238.

Suzuki N, Mittler R. Reactive oxygen species and temperature stresses: a delicate balance between signaling and destruction. Physiologia plantarum. 2006 Jan 1;126(1):45-51.

Boxall SF, Foster JM, Bohnert HJ, Cushman JC, Nimmo HG, Hartwell J. Conservation and divergence of the central circadian clock in the stress-inducible CAM plant Mesembryanthemum crystallinum: clock operation in a CAM halophyte reveals clock compensation against abiotic stress. Plant Physiol. 2005;137:969-82

Cramer GR, Cushman JC, Schooley DA, Quilici D, Vincent D, Bohlman MC, Ergül A, Tattersall EAT, Tillett R, Evans J, Delacruz R, Schlauch K, Mendes P. Progress in bioinformatics - the challenge of integrating transcriptomic, proteomic and metabolomic information. Acta Hort. 2005;689:417-25.

Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, Coutu J, Shulaev V, Schlauch K, Mittler R. Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. The Plant Cell. 2005 Jan 1;17(1):268-81. PMCID: PMC544504, PMID: 15608336.

Davletova S, Schlauch K, Coutu J, Mittler R. The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant physiology. 2005 Oct 1;139(2):847-56. PMCID: PMC1256000, PMID: 16183833.

Gehrig HH, Wood JA, Cushman MA, Virgo A, Cushman JC, Winter K. Research note: Large gene family of phosphoenolpyruvate carboxylase in the crassulacean acid metabolism plant Kalanchoe pinnata (Crassulaceae) characterised by partial cDNA sequence analysis. Functional Plant Biology. 2005 Jun 17;32(5):467-72.

da Silva FG, Iandolino A, Lim H, Baek J, Leslie A, Xu J, Cook DR, Al-Kayal F, Bohlman MC, Cushman MA, Ergul A, Figueroa R, Kabuloglu EK, Osborne C, Rowe J, Tattersall EA, Cramer GR, Cushman JC. Characterizing the grape transcriptome: analysis of ESTs from multiple Vitis species and development of a compendium of gene expression during berry development. Plant Physiol. 2005;139: 574-97. PMCID: PMC1255978, PMID: 16219919.

Kidd T, Abu-Shumays R, Katzen A, Sisson JC, Jiménez G, Pinchin S, Sullivan W, Ish-Horowicz D. The ε-subunit of mitochondrial ATP synthase is required for normal spindle orientation during the drosophila embryonic divisions. Genetics. 2005 Jun 1;170(2):697-708. PMCID: PMC1450411, PMID: 15834145.

Kore-eda S, Noake C, Ohishi M, Ohnishi JI, Cushman JC. Transcriptional profiles of organellar metabolite transporters during induction of crassulacean acid metabolism in Mesembryanthemum crystallinum. Functional plant biology. 2005 Jun 17;32(5):451-66.

Suzuki N, Rizhsky L, Liang H, Shuman J, Shulaev V, Mittler R. Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. Plant Physiology. 2005 Nov 1;139(3):1313-22. PMCID: PMC1283768, PMID: 16244138.

Tattersall EA, Ergul A, AlKayal F, DeLuc L, Cushman JC, Cramer GR. Comparison of methods for isolating high-quality RNA from leaves of grapevine. American Journal of Enology and Viticulture. 2005 Dec 1;56(4):400-6.

Dolan EA, Yelle RB, Beck BW, Fischer JT, Ichiye T. Protein control of electron transfer rates via polarization: molecular dynamics studies of rubredoxin. Biophysical journal. 2004 Apr 30;86(4):2030-6. PMCID: PMC1304056, PMID: 15041645.

Kishore VK, Velasco P, Shintani DK, Rowe J, Rosato C, Adair N, Slabaugh MB, Knapp SJ. Conserved simple sequence repeats for the Limnanthaceae (Brassicales). Theoretical and Applied Genetics. 2004 Feb 1;108(3):450-7. PMID: 14647896.

Mittler R, Vanderauwera S, Gollery M, Van Breusegem F. Reactive oxygen gene network of plants. Trends in plant science. 2004 Oct 31;9(10):490-8. PMID: 15465684.